Proteins and Macromolecules - English
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- Jmol Application Tutorials - English
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the outsider oxygen molecules of protein does not take hydrogen molecule
whenever i try to fix hydrogen and minimize, hydrogen adds only in the backbone of protein structure. the oxygen molecules that present beside the protein does not get the hydrogen molecule. i tried it other pdb files, but there is same issue. is it a malfunction? give me suitable solution.
05-06M 30-40SJune 20, 2025, 1:59 a.m. riteshchowdhury
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Hydrogen is not getting added
In Jmol version 14.31.2, hydrogen is not getting added after clicking on “add hydrogen” option from the model kit menu. How to add the hydrogen atoms to the molecule?
05-06M 20-30SJune 18, 2025, 9:17 a.m. hbammkanti
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Code file of Human Insulin
In Jmol version 14.31.2, the code file provided for human insulin opens in cartoon style. How do I get the same display style as shown in video?
05-06M 0-10SJune 20, 2025, 2:19 p.m. hbammkanti
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Overview of Jmol Application -
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Introduction to Jmol Application
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3
Create and edit molecular models
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Modify Display and View
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Measurements and Labeling
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Interchange the Element in the 3D Model
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Script Console and Script Commands
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Display Lone Pair of Electrons
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Surfaces and Orbitals
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Structures from Database
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Crystal Structure and Unit Cell
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Bond Rotation in Jmol
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Superimposing Structures
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Proteins and Macromolecules
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3D Models of Enzymes
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Symmetry and Point Groups
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Animation using Script Commands
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Simulated NMR Spectrum using Jmol
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Creating a Basic JSmol Integrated Web Page
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Editing the JSmol Integrated Web Page
Questions posted on ST Forums:
Outline:
Load structures of proteins from Protein Data Bank (PDB). Download .pdb files from the database. View the 3D structure of Insulin using PDB code (4EX1). View the structure without water molecules. Modify the display of secondary structure. Highlight hydrogen bonds and disulfide bonds
Assignment
Status: